miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|83817743|gb|CX265966.1|CX265966 GGACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATC
CTTAAAAGTCCCTTCCTCTTCCTCTTCCTCTTCCTCGAACCACACCCGTAGATTATCATCTTCTTCTCAACGGAAGACTC
TCTCGTTCTCGTCGTCTTCTCTTACCGGAGAGAAACTCAACCCCACGCAGGAGATCATCATCTCGAATCTCCCACGTGGC
AACGAGAGAAGAACGCCATCGATCGTCTCTCCAAAAGCAGTTTCCGATTCGCAAAACTCGCAAACTTGCCTTGATCCTGA
CGCTAGCAGAAGTGTGTTGGGGATAATTCTGGGAGGTGGTGCTGGAACGAGATTGTATCCGCTAACGAAGAAGAGAGCGA
AGCCAGCTGTTCCTCTCGGCGCCAACTACCGTCTCATTGATATCCCAGTGAGCAATTGCTTGAACAGTAACATCTCCAAG
ATCTATGTCCTTACTCAGTTCAACTCCGCTTCTCTCAACCGCCATCTCTCCCGAGCTTACGCCAGCAACATGGGTGGTTA
CAAGAACGAAGGCTTCGTCGAGGTTCTTGCTGCTCAACAGAGTCCCGAGAATCCCAATTGGTTTCAGGGGACTGCTGATG
CAGTGAGGCAGTACTTGTGGCTGTTTGAAGAGCACAATGTGTTGGAGTTTTTGGTTCTTGCAGGGGGATCATTTTGTACC
GTATGGACTACGAG




Most similar to sp|Q9M462|GLGS_BRANA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small
           subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2
           SV=1
          Length = 520

 Score =  383 bits (984), Expect = e-106
 Identities = 199/217 (91%), Positives = 199/217 (91%)
 Frame = +1

Query: 55  MATMAAIGSLKVPXXXXXXXXXXXXXXXXXXQRKTLSFSSSSLTGEKLNPTQEIIISNLP 234
           MATMAAIGSLKVP                  QRKTLSFSSSSLTGEKLNPTQEIIISNLP
Sbjct: 1   MATMAAIGSLKVPSSSSNHTRRLSSSS----QRKTLSFSSSSLTGEKLNPTQEIIISNLP 56

Query: 235 RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP 414
           RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP
Sbjct: 57  RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP 116

Query: 415 LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAA 594
           LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAA
Sbjct: 117 LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAA 176

Query: 595 QQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAG 705
           QQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAG
Sbjct: 177 QQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAG 213